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Q.21 Botany ⭐ 360° Option Elimination Active
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NEET 2020 Botany Question 21 Solution

Topic: Biotechnology: Principles and Processes · Official NTA Booklet Code E1
NEET 2020 Botany Question 21: Palindromic Recognition Sequence of Restriction Endonuclease EcoRI

Question

The specific palindromic sequence which is recognized by EcoRI is:

  1. (1)5' - GAATTC - 3' 3' - CTTAAG - 5'
  2. (2)5' - GGAACC - 3' 3' - CCTTGG - 5'
  3. (3)5' - CTTAAG - 3' 3' - GAATTC - 5'
  4. (4)5' - GGATCC - 3' 3' - CCTAGG - 5'
✓
Verified Against NTA Final Answer Key
Option (1) : 5' - GAATTC - 3' / 3' - CTTAAG - 5'
📚 Biotechnology: Principles and Processes Easy
📋 Given Parameters & Problem Setup
Restriction Endonuclease EcoRI (from Escherichia coli RY 13)
Question Objective Identify the exact palindromic recognition hexanucleotide sequence
⚡

The 30-Second Exam Hall Shortcut: ⚡ "EcoRI Palindrome: 5'-GAATTC-3' / 3'-CTTAAG-5'"

⏱️ Save ~20 seconds

The classic recognition sequence of EcoRI is the symmetrical hexanucleotide palindrome 5'-GAATTC-3', cleaving between G and A to leave sticky single-stranded overhangs (5'-AATT-3'). Option (1) is 100% correct in under 5 seconds!

1 Recall the canonical EcoRI recognition sequence from NCERT: 5′-GAATTC-3′5'\text{-GAATTC-}3'.
2 Verify the complementary antiparallel strand: 3′-CTTAAG-5′3'\text{-CTTAAG-}5'.
3 Notice cleave position: Cuts between G and A on both strands.
4 Select Option (1).
🛡️
Why You Can 100% Trust This Shortcut: NCERT Biology · Biotechnology: Principles and Processes (Tools of Recombinant DNA Technology: The recognition sequence for EcoRI is 5'-GAATTC-3' and 3'-CTTAAG-5'. EcoRI cuts the DNA between bases G and A only when the sequence GAATTC is present in the DNA).
📐

Step-by-Step Rigorous Workflow & Mathematical Proof

Step 1

Molecular Architecture of EcoRI Cleavage

_Eco_RI is a type II restriction endonuclease isolated from the bacterium _Escherichia coli_ strain RY 13: - It scans double-stranded DNA and specifically binds to a symmetrical 6-base pair palindromic sequence: 5′−G ↓ A A T T C−3′3′−C T T A A ↑ G−5′\begin{aligned} 5'-\text{G } \downarrow \text{ A A T T C}-3' \\ 3'-\text{C T T A A } \uparrow \text{ G}-5' \end{aligned} - The enzyme cleaves the phosphodiester bond specifically between G (guanine) and A (adenine) on each strand, equidistant from the axis of symmetry. - This staggered, asymmetrical cut leaves single-stranded 5′-AATT-3′5'\text{-AATT-}3' protruding termini termed sticky or cohesive ends that readily form complementary hydrogen bonds with fragments cut by the same enzyme.

5′−G↓A A T T C−3′3′−C T T A A↑G−5′  ⟹  Recognized by EcoRI\begin{array}{ccc} 5'-\mathbf{G} \downarrow \mathbf{A\,A\,T\,T\,C}-3' \\[4pt] 3'-\mathbf{C\,T\,T\,A\,A} \uparrow \mathbf{G}-5' \end{array} \implies \text{Recognized by } \mathbf{Eco\text{RI}}
Step 2

Analysis of Distractor Sequences

- Option (2): 5′-GGAACC-3′5'\text{-GGAACC-}3' is not palindromic. - Option (3): Inverts 5' and 3' polarity (5′-CTTAAG-3′5'\text{-CTTAAG-}3' is incorrect polarity orientation). - Option (4): 5′-GGATCC-3′5'\text{-GGATCC-}3' is the recognition palindrome of a different restriction enzyme, _Bam_HI, not _Eco_RI.

⭐

360° Option Elimination Engine Key Feature

Diagnose every choice: Know exactly why the right option works and why distractors fail.

4-Option Deep Scan
1 A
✓ 100% Correct
Verdict & Scientific Reason:

Correct. This is the canonical, verbatim palindromic sequence recognized and cut by EcoRI.

💡
Why this is airtight: None. Direct recall of textbook molecular cloning sequences.
2 B
✗ Incorrect
Verdict & Scientific Reason:

Incorrect. This sequence lacks rotational dyad palindrome symmetry.

⚠️
Student Fallacy (Why candidates pick this trap): Failing to check whether the sequence is a true palindrome.
3 C
✗ Incorrect
Verdict & Scientific Reason:

Incorrect. Reverses the 5' and 3' orientation of the bases.

⚠️
Student Fallacy (Why candidates pick this trap): Ignoring strand polarity.
4 D
✗ Incorrect
Verdict & Scientific Reason:

Incorrect. 5'-GGATCC-3' is the recognition site of BamHI, not EcoRI.

⚠️
Student Fallacy (Why candidates pick this trap): Confusing BamHI with EcoRI.
⚠️

NTA Trap Alert: EcoRI vs BamHI Recognition Site Trap

Option 4 lists 5'-GGATCC-3', which is also a famous hexanucleotide palindrome, but belongs to BamHI (isolated from *Bacillus amyloliquefaciens*). EcoRI specifically recognizes GAATTC.

🛡️ How to avoid the -1 mark: Remember: EcoRI = G-AATTC; BamHI = G-GATCC.
📖

Core NEET Syllabus Standard

NEET / NCERT Biology · Biotechnology: Principles and Processes Standard Benchmark
Core Scientific Principle Tested:

"EcoRI recognizes the palindromic sequence 5'-GAATTC-3' and cuts between G and A."

Syllabus Focus: Restriction Enzymes
✓ Core NEET UG Syllabus Anchor Syllabus & Academic Standards ↗

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